PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007882-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 337aa    MW: 38041.5 Da    PI: 7.9698
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007882-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-05260282123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk F  + + ++H +++
  NNU_007882-RA 260 FMCRKCGKAFAVRGDWRTHEKNC 282
                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.91E-5172198No hitNo description
Gene3DG3DSA:3.30.160.602.7E-6176195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.67176198IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598176203IPR007087Zinc finger, C2H2
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-6242280No hitNo description
Gene3DG3DSA:3.30.160.608.8E-6247280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808260280IPR007087Zinc finger, C2H2
SMARTSM0035549260280IPR015880Zinc finger, C2H2-like
SMARTSM00355150286309IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MTDPYSNFFN GWFNYRSLHH HFSSSTSSSS NPSYTPYAYN YYQNNIISST DRKNSLVHYQ  60
SPPPSPPLRE ALPLLSLSPT RHEEQGASCS AMDEDKNKPK DESFSSIADD ETVTVALHIG  120
LPSPSAADLI SSVSSSTEKT ETEGVTVASG YTTNRLNKGQ YWIPTPSQIL IGPTQFACPV  180
CCKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLRL PCYCCAPGCR NNIDHPRAKP  240
LKDFRTLQTH YKRKHGIKPF MCRKCGKAFA VRGDWRTHEK NCGKLWYCIC GSDFKHKRSL  300
KDHIKAFGHG HAAYGIDCFE EEEEPASEIE QDDETSQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257283.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ9SVY11e-146ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLF6HL470.0F6HL47_VITVI; Putative uncharacterized protein
STRINGVIT_08s0007g08070.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-119C2H2 family protein