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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_007882-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | C2H2 | ||||||||
Protein Properties | Length: 337aa MW: 38041.5 Da PI: 7.9698 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.5e-05 | 260 | 282 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ NNU_007882-RA 260 FMCRKCGKAFAVRGDWRTHEKNC 282 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.91E-5 | 172 | 198 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.7E-6 | 176 | 195 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.67 | 176 | 198 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.598 | 176 | 203 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 178 | 198 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.46E-6 | 242 | 280 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.8E-6 | 247 | 280 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.808 | 260 | 280 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 49 | 260 | 280 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 150 | 286 | 309 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MTDPYSNFFN GWFNYRSLHH HFSSSTSSSS NPSYTPYAYN YYQNNIISST DRKNSLVHYQ 60 SPPPSPPLRE ALPLLSLSPT RHEEQGASCS AMDEDKNKPK DESFSSIADD ETVTVALHIG 120 LPSPSAADLI SSVSSSTEKT ETEGVTVASG YTTNRLNKGQ YWIPTPSQIL IGPTQFACPV 180 CCKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLRL PCYCCAPGCR NNIDHPRAKP 240 LKDFRTLQTH YKRKHGIKPF MCRKCGKAFA VRGDWRTHEK NCGKLWYCIC GSDFKHKRSL 300 KDHIKAFGHG HAAYGIDCFE EEEEPASEIE QDDETSQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010257283.1 | 0.0 | PREDICTED: protein TRANSPARENT TESTA 1-like | ||||
Swissprot | Q9SVY1 | 1e-146 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | F6HL47 | 0.0 | F6HL47_VITVI; Putative uncharacterized protein | ||||
STRING | VIT_08s0007g08070.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-119 | C2H2 family protein |